INTRODUCTION: ORGANIC CHEMISTRY REVIEW 1
I. Brief Review of Organic Chemistry 1
II. Acids, Bases, and Buffers 1
III. Carbohydrate Structure 4
IV. Proteoglycans, Glycoproteins, and Glycolipids 9
V. Amino Acids 11
VI. Lipids 14
VII. Membranes 16
VIII. Nucleotides 18
Review Test 19

  1. PROTEIN STRUCTURE AND FUNCTION 23
    I. General Aspects of Protein Structure 23
    II. Examples of Medically Important Proteins 28
    Review Test 34
  2. ENZYMES 38
    I. General Properties of Enzymes 38
    II. Dependence of Velocity on Enzyme and Substrate Concentrations,
    Temperature, and pH 39
    III. The Michaelis-Menten Equation 40
    IV. The Lineweaver-Burk Plot 41
    V. Inhibitors 41
    VI. Allosteric Enzymes 43

VII. Regulation of Enzyme Activity by Post-Translational (Covalent)
Modification 44
VIII. Regulation by Protein–Protein Interactions 44
IX. Isoenzymes 45
Review Test 46

  1. BIOCHEMISTRY OF DIGESTION 50
    I. Digestion of Carbohydrates 50
    II. Digestion of Dietary Triacylglycerol 51
    III. Protein Digestion and Amino Acid Absorption 54
    Review Test 57
  2. GLYCOLYSIS 63
    I. General Overview 63
    II. Transport of Glucose into Cells 63
    III. Reactions of Glycolysis 64
    IV. Special Reactions in Red Blood Cells 66
    V. Regulatory Enzymes of Glycolysis 66
    VI. The Fate of Pyruvate 68
    VII. Generation of Adenosine Triphosphate by Glycolysis 69
    Review Test 72
  3. THE TRICARBOXYLIC ACID CYCLE, ELECTRON
    TRANSPORT CHAIN, AND OXIDATIVE METABOLISM 77
    I. The Tricarboxylic Acid Cycle 77
    II. Electron Transport Chain and Oxidative Phosphorylation 85
    III. Reactive Oxygen Species 90
    Review Test 93
  4. GLYCOGEN METABOLISM 97
    I. Overview of Glycogen Structure and Metabolism 97
    II. Glycogen Structure 97
    III. Glycogen Synthesis 97
    IV. Glycogen Degradation 100
    V. Lysosomal Degradation of Glycogen 101
    VI. Regulation of Glycogen Degradation 102
    VII. Regulation of Glycogen Synthesis 104
    Review Test 105
  1. GLUCONEOGENESIS AND THE MAINTENANCE
    OF BLOOD GLUCOSE LEVELS 109
    I. Overview 109
    II. Reactions of Gluconeogenesis 109
    III. Maintenance of Blood Glucose Levels 114
    Review Test 119
  2. MISCELLANEOUS CARBOHYDRATE METABOLISM 123
    I. Fructose and Galactose Metabolism 123
    II. Pentose Phosphate Pathway 126
    III. Proteoglycans, Glycoproteins, and Glycolipids 129
    Review Test 133
  3. FATTY ACID METABOLISM 137
    I. Fatty Acid and Triacylglycerol Synthesis 137
    II. Formation of Triacylglycerol Stores in Adipose Tissue 141
    III. Fatty Acid Oxidation 142
    IV. High Yield Comparison from Fatty Acid Synthesis and
    Oxidation 146
    Review Test 147
  4. CHOLESTEROL METABOLISM AND BLOOD
    LIPOPROTEINS 151
    I. Cholesterol and Bile Salt Metabolism 151
    II. Blood Lipoproteins 155
    Review Test 159
  5. KETONES AND OTHER LIPID DERIVATIVES 163
    I. Ketone Body Synthesis and Utilization 163
    II. Phospholipid and Sphingolipid Metabolism 165
    III. Metabolism of the Eicosanoids 166
    IV. Synthesis of the Steroid Hormones 169
    Review Test 172
  6. AMINO ACID METABOLISM 176
    I. Addition and Removal of Amino Acid Nitrogen 176
    II. Urea Cycle 177

III. Synthesis and Degradation of Amino Acids 180
Review Test 187

  1. PRODUCTS DERIVED FROM AMINO ACIDS 191
    I. Special Products Derived from Amino Acids 191
    II. Tetrahydrofolate and S-Adenosylmethionine: The One-Carbon Carriers 198
    Review Test 201
  2. NUCLEOTIDE AND PORPHYRIN METABOLISM 203
    I. Purine and Pyrimidine Metabolism 203
    II. Heme Metabolism 208
    Review Test 211
  3. INTEGRATIVE METABOLISM AND NUTRITION 215
    I. Metabolic Fuels and Dietary Requirements 215
    II. Metabolism During the Fed or Absorptive State 219
    III. Fasting 221
    IV. Prolonged Fasting (Starvation) 224
    V. Biochemical Functions of Tissues 225
    Review Test 229
  4. MOLECULAR ENDOCRINOLOGY 233
    I. General Mechanisms of Hormone Action 233
    II. Regulation of Hormone Levels 236
    III. Actions of Specific Hormones 237
    Review Test 247
  5. DNA REPLICATION AND TRANSCRIPTION 251
    I. Nucleic Acid Structure 251
    II. Synthesis of DNA (Replication) 256
    III. Synthesis of RNA (Transcription) 262
    Review Test 267
  6. RNA TRANSLATION AND PROTEIN SYNTHESIS 271
    I. Protein Synthesis (Translation of Messenger RNA) 271
    II. Regulation of Protein Synthesis 276
    Review Test 282

GENETICS 286
I. Chromosomes 286
II. Cell Cycle 286
III. Control of the Cell Cycle 288
IV. Meiosis 289
V. Gene Dosage 292
VI. Fundamentals of Mendelian Genetics 293
VII. The Punnett Square 294
VIII. Modes of Inheritance 294
IX. Moderators of Inheritance 296
X. Hardy-Weinberg Principle 296
XI. Genetic Testing 297
Review Test 300

  1. BIOCHEMISTRY OF CANCER 305
    I. Oncogenes 305
    II. Tumor-Suppressor Genes 307
    III. Apoptosis 308
    IV. Mechanism of Oncogenesis 309
    V. Molecular Carcinogenesis 311
    VI. DNA Repair and Carcinogenesis 313
    VII. Molecular Progression of Cancer 314
    VIII. Molecular Markers in Cancer Biology 315
    Review Test 316
  2. TECHNIQUES IN BIOCHEMISTRY,
    MOLECULAR BIOLOGY, AND GENETICS 319
    I. Biotechnology Involving Recombinant DNA 319
    II. Technology Involving Proteins 329
    Review Test 332
    Comprehensive Examination 336
    Index 361

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